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Mirrors of Protein Data Banks
Our Resources
- PDB (PDB в обработке М.Лобанова - ручное обновление, исправление ошибок)
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IsUnstruct предсказание неструктурированных участков белковой цепи по аминокислотной последовательности
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OGU предсказание неструктурированных участков белковой цепи по аминокислотной последовательности
- Compact
база данных по кинетике сворачивания белковых структур
Nucleic Acids Res. 2009 Jan; 37(Database issue):D342-6
- KineticDB
база данных по кинетике сворачивания белковых структур
Nucleic Acids Res. 2009 Jan; 37(Database issue):D342-6
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Fold Amyloid Base
база данных амилоидогенных фрагментов, известных из экспериментальных данных
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Fold Amyloid
сервер для предсказания амилоидогенных участков по аминокислотной последовательности
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ComSin
base of protein structures in bound (Complex) and unbound (Single) states in relation to their intrinsic disorder.
Nucleic Acids Res. 2010 Jan;38(Database issue): D283-7.
http://www.pathguide.org/fullrecord.php?DBID=321
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OG3
предсказание границ доменов по аминокислотной последовательности
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BM_OG
предсказание границ доменов по аминокислотной последовательности
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B_factor
предсказание защищенности аминокислотных остатков от водородно-дейтериевого обмена
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Thermo- and mesophilic
Database of structural pairs of proteins from thermo- and
mesophilic organisms
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Phi-values
Experimentally measured and theoretically predicted phi-values.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV. FoldNucleus: web server
for the prediction of RNA and protein folding nuclei from their 3D structures.
Bioinformatics. 2015 Oct 15;31(20):3374-6. doi: 10.1093/bioinformatics/btv369.
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Ideal-base
Database of 3D structures of "ideally" folded proteins.
Garbuzynskiy S.O., Lobanov M.Yu., Galzitskaya O.V. (2004). To be folded or to be unfolded? Protein Science, v.13 (11), pp. 2871-2877.
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scop_1.61
Database of 3D structures with identity below 80%.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006).
Prediction of natively unfolded regions in protein chains. Molecular Biology, v.40 (2), pp. 298-304.
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Natively unfolded
Database of natively unfolded proteins.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006).
Prediction of natively unfolded regions in protein chains.
Molecular Biology, v.40 (2), pp. 298-304.
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Folded 559
Database of 559 globular proteins.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006).
Prediction of natively unfolded regions in protein chains.
Molecular Biology, v.40 (2), pp. 298-304.
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Folded 80
Database of 80 globular proteins.
Galzitskaya O.V., Garbuzynskiy S.O., Lobanov M.Yu. (2006).
Prediction of natively unfolded regions in protein chains.
Molecular Biology, v.40 (2), pp. 298-304.
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HRAP
Database HRAP.
Nucleic Acids Res. 2014 Jan;42(Database issue):D273-8. doi:
10.1093/nar/gkt927. Lobanov MY, Sokolovskiy IV, Galzitskaya OV.
HRaP: database of occurrence of HomoRepeats and patterns in proteomes.
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HRADIS
Database HRADIS.
Lobanov MY, Klus P, Sokolovsky IV, Tartaglia GG, Galzitskaya OV.
Non-random distribution of homo-repeats: links with biological functions and human diseases,
Sci Rep. 2016 Jun 3;6:26941. doi: 10.1038/srep26941.
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foldnucleus
Server foldnucleus.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV. Bioinformatics.
2015 Oct 15;31(20):3374-6. doi: 10.1093/bioinformatics/btv369.
FoldNucleus: web server for the prediction of RNA and protein
folding nuclei from their 3D structures.
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foldhandedness
Server foldhandedness.
Pereyaslavets LB, Glyakina AV, Dovidchenko NV, Sokolovskiy IV,
Galzitskaya OV. What handedness and angles between helices has the studied three-helical
protein domain? Bioinformatics. 2015 Mar 15;31(6):963-5. doi: 10.1093/bioinformatics/btu737.
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Clustered PDB
Server Clustered PDB.
Lobanov M.Yu., Galzitskaya O.V., Likhachev I.V.
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